Mercurial > repos > iuc > deseq2
changeset 7:681fd2c5f47a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 470804fe1d65ce5bf49804c7f249c51f6a567f9f-dirty
| author | iuc |
|---|---|
| date | Sat, 05 Sep 2015 04:58:32 -0400 |
| parents | 982bd8bfa44c |
| children | 6a8678140dd9 |
| files | deseq2.xml tool_dependencies.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/deseq2.xml Sat Sep 05 04:37:45 2015 -0400 +++ b/deseq2.xml Sat Sep 05 04:58:32 2015 -0400 @@ -25,10 +25,10 @@ echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ") ]]> </version_command> - <command interpreter="Rscript"> + <command> <![CDATA[ #import json - \$DESEQ2_ROOT_PATH/script/deseq2.R + Rscript \$DESEQ2_ROOT_PATH/script/deseq2.R -o "$deseq_out" #if $pdf: -p "$plots"
--- a/tool_dependencies.xml Sat Sep 05 04:37:45 2015 -0400 +++ b/tool_dependencies.xml Sat Sep 05 04:58:32 2015 -0400 @@ -4,6 +4,6 @@ <repository changeset_revision="3d28600fc82c" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="deseq2" version="1.8.1"> - <repository changeset_revision="4e25d6e25731" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="2f592c7cd897" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency>