# HG changeset patch
# User iuc
# Date 1441443512 14400
# Node ID 681fd2c5f47abbd475f1f176765db9ca67470219
# Parent  982bd8bfa44c4f86860cf9a36c020ae572fcf6c2
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit 470804fe1d65ce5bf49804c7f249c51f6a567f9f-dirty

diff -r 982bd8bfa44c -r 681fd2c5f47a deseq2.xml
--- a/deseq2.xml	Sat Sep 05 04:37:45 2015 -0400
+++ b/deseq2.xml	Sat Sep 05 04:58:32 2015 -0400
@@ -25,10 +25,10 @@
         echo $(R --version | grep version | grep -v GNU)", DESeq2 version" $(R --vanilla --slave -e "library(DESeq2); cat(sessionInfo()\$otherPkgs\$DESeq2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
     ]]>
     </version_command>
-    <command interpreter="Rscript">
+    <command>
     <![CDATA[
         #import json
-        \$DESEQ2_ROOT_PATH/script/deseq2.R
+        Rscript \$DESEQ2_ROOT_PATH/script/deseq2.R
             -o "$deseq_out"
             #if $pdf:
                 -p "$plots"
diff -r 982bd8bfa44c -r 681fd2c5f47a tool_dependencies.xml
--- a/tool_dependencies.xml	Sat Sep 05 04:37:45 2015 -0400
+++ b/tool_dependencies.xml	Sat Sep 05 04:58:32 2015 -0400
@@ -4,6 +4,6 @@
         <repository changeset_revision="3d28600fc82c" name="package_r_3_2_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="deseq2" version="1.8.1">
-       <repository changeset_revision="4e25d6e25731" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+       <repository changeset_revision="2f592c7cd897" name="package_deseq2_1_8_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>