Mercurial > repos > iuc > deseq2
changeset 8:6a8678140dd9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deseq2 commit eecb633ff51d61e8f94f580bb96053434029ab78
| author | iuc |
|---|---|
| date | Fri, 11 Sep 2015 16:11:04 -0400 |
| parents | 681fd2c5f47a |
| children | b8de70d21211 |
| files | deseq2.xml test-data/deseq2_out.tab test-data/deseq2_out_filtered.tab |
| diffstat | 3 files changed, 6859 insertions(+), 6859 deletions(-) [+] |
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--- a/deseq2.xml Sat Sep 05 04:58:32 2015 -0400 +++ b/deseq2.xml Fri Sep 11 16:11:04 2015 -0400 @@ -28,7 +28,7 @@ <command> <![CDATA[ #import json - Rscript \$DESEQ2_ROOT_PATH/script/deseq2.R + Rscript \$DESEQ2_ROOT_PATH/DESeq2/script/deseq2.R -o "$deseq_out" #if $pdf: -p "$plots"
--- a/test-data/deseq2_out.tab Sat Sep 05 04:58:32 2015 -0400 +++ b/test-data/deseq2_out.tab Fri Sep 11 16:11:04 2015 -0400 @@ -1,3062 +1,3062 @@ -FBgn0003360 1933.95040021558 2.83931228949133 0.131427107609053 21.603703689023 1.65776558476455e-103 4.55056653017869e-100 -FBgn0029167 1648.81894046778 2.12846963021472 0.111026271802824 19.1708646580042 6.48223970422051e-82 8.89687399404264e-79 -FBgn0025111 655.359768612902 -2.56442936474885 0.137667338029225 -18.6277253665241 1.91491287456294e-77 1.75214528022509e-74 -FBgn0029896 211.4755450268 2.08777269046945 0.146415563071669 14.2592265922408 3.9278337941104e-46 2.69547594120826e-43 -FBgn0000071 151.249383869297 -2.0778882534883 0.168180795920852 -12.3550863349831 4.57264981566512e-35 2.51038474880015e-32 -FBgn0027279 1317.42349329018 1.15789519293151 0.0979487508202358 11.8214391019298 3.02458393834057e-32 1.38374715179081e-29 -FBgn0023479 1361.36610109448 1.42278095026959 0.123382436303083 11.531470709288 9.15659579596678e-31 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--- a/test-data/deseq2_out_filtered.tab Sat Sep 05 04:58:32 2015 -0400 +++ b/test-data/deseq2_out_filtered.tab Fri Sep 11 16:11:04 2015 -0400 @@ -1,3062 +1,3062 @@ -FBgn0003360 1933.95040021558 2.83931228949133 0.131427107609053 21.603703689023 1.65776558476455e-103 4.55056653017869e-100 -FBgn0029167 1648.81894046778 2.12846963021472 0.111026271802824 19.1708646580042 6.48223970422051e-82 8.89687399404264e-79 -FBgn0025111 655.359768612902 -2.56442936474885 0.137667338029225 -18.6277253665241 1.91491287456294e-77 1.75214528022509e-74 -FBgn0029896 211.4755450268 2.08777269046945 0.146415563071669 14.2592265922408 3.9278337941104e-46 2.69547594120826e-43 -FBgn0000071 151.249383869297 -2.0778882534883 0.168180795920852 -12.3550863349831 4.57264981566512e-35 2.51038474880015e-32 -FBgn0027279 1317.42349329018 1.15789519293151 0.0979487508202358 11.8214391019298 3.02458393834057e-32 1.38374715179081e-29 -FBgn0023479 1361.36610109448 1.42278095026959 0.123382436303083 11.531470709288 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