Mercurial > repos > geert-vandeweyer > clusterfast

changeset 25:89f22d2a9dfe draft

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small change to notify users of minimal velvet threads needed
author geert-vandeweyer
date Mon, 11 Aug 2014 05:21:21 -0400
parents 33a456e6dadc
children 9f96e2fa94ed
files readme.rst
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/readme.rst	Mon Aug 11 05:20:55 2014 -0400
+++ b/readme.rst	Mon Aug 11 05:21:21 2014 -0400
@@ -20,6 +20,6 @@
 
 - NOVOALIGN path: (novoalign binaries are NOT automatically installed, see package_novoalign for details ) : <tool_dependency_dir>/environment_settings/NOVOALIGN_PATH/geert-vandeweyer/package_novoalign/<hash_string>/env.sh
 - index files (clusterfast.loc holds info on 2bit/fasta/novoalign references) :  <path>/galaxy-dist/tool-data/<toolshed>/repos/geert-vandeweyer/clusterfast/<hash>/clusterfast.loc. Read comments for the exact syntax.
-- number of velvet threads : <tool_dependency_dir>/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/<hash_string>/env.sh
+- number of velvet threads : <tool_dependency_dir>/environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet/<hash_string>/env.sh . Note: Set this value to at least 2, or velveth hangs.