Mercurial > repos > geert-vandeweyer > clusterfast

changeset 24:33a456e6dadc draft

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remove output dir tag, set remove temp to true
author geert-vandeweyer
date Mon, 11 Aug 2014 05:20:55 -0400
parents 42439d29305d
children 89f22d2a9dfe
files ClusterFast.xml
diffstat 1 files changed, 1 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/ClusterFast.xml	Fri Aug 08 05:30:54 2014 -0400
+++ b/ClusterFast.xml	Mon Aug 11 05:20:55 2014 -0400
@@ -11,14 +11,13 @@
 	-p "${indexes.fields.path}" 
 		
       ## output files
-      	-o $__new_file_path__  ## use galaxy temp dir for automatic cleanup.
 	-c $contigs
 	-y $bp1
 	-z $bp2
 	 
 
       ## run parameters
-      	-r 0 ## clean up not needed, as this is in galaxy tmp.
+      	-r 1
       	-m1 $m1
 	-m2 $m2
 	-d $distance