# HG changeset patch # User geert-vandeweyer # Date 1407748881 14400 # Node ID 89f22d2a9dfe924beea014d6a7fe356ed9ae83cf # Parent 33a456e6dadc58d6771a65c16b3a741046edcd94 small change to notify users of minimal velvet threads needed diff -r 33a456e6dadc -r 89f22d2a9dfe readme.rst --- a/readme.rst Mon Aug 11 05:20:55 2014 -0400 +++ b/readme.rst Mon Aug 11 05:21:21 2014 -0400 @@ -20,6 +20,6 @@ - NOVOALIGN path: (novoalign binaries are NOT automatically installed, see package_novoalign for details ) : /environment_settings/NOVOALIGN_PATH/geert-vandeweyer/package_novoalign//env.sh - index files (clusterfast.loc holds info on 2bit/fasta/novoalign references) : /galaxy-dist/tool-data//repos/geert-vandeweyer/clusterfast//clusterfast.loc. Read comments for the exact syntax. -- number of velvet threads : /environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet//env.sh +- number of velvet threads : /environment_settings/OMP_THREAD_LIMIT/geert-vandeweyer/package_velvet//env.sh . Note: Set this value to at least 2, or velveth hangs.