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author fz77
date Mon, 17 Nov 2014 10:15:57 -0500
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COMPILE

g++ pscan_chip_g.cpp -o pscan_chip_g -O3 -lgsl -lgslcblas

(Needs GSL - Gnu Scientific Library)

The wrapper assumes that the executables pscan_chip_g and twoBitToFa are on the Galaxy user's path.
You can download twoBitToFa here:
http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa

LOC FILES

.loc files (put them in the tool-data folder of your Galaxy install):

twobit.loc 			location of genomes in 2bit format
jaspar_pchip_background.loc	JASPAR background files
transfac_pchip_background.loc	TRANSFAC background files

Please contact federico.zambelli@unimi.it for bug report, suggestions and
feed-back.

For more infos on Pscan-ChIP go to:

http://www.beaconlab.it/pscan_chip_dev