Mercurial > repos > fz77 > pscan_chip_test
changeset 10:5e2af7c006b0 draft default tip
Uploaded
| author | fz77 |
|---|---|
| date | Mon, 17 Nov 2014 10:15:57 -0500 |
| parents | 6a5cfb8a872f |
| children | |
| files | pscan_chip/README.txt |
| diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pscan_chip/README.txt Mon Nov 17 10:15:57 2014 -0500 @@ -0,0 +1,24 @@ +COMPILE + +g++ pscan_chip_g.cpp -o pscan_chip_g -O3 -lgsl -lgslcblas + +(Needs GSL - Gnu Scientific Library) + +The wrapper assumes that the executables pscan_chip_g and twoBitToFa are on the Galaxy user's path. +You can download twoBitToFa here: +http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa + +LOC FILES + +.loc files (put them in the tool-data folder of your Galaxy install): + +twobit.loc location of genomes in 2bit format +jaspar_pchip_background.loc JASPAR background files +transfac_pchip_background.loc TRANSFAC background files + +Please contact federico.zambelli@unimi.it for bug report, suggestions and +feed-back. + +For more infos on Pscan-ChIP go to: + +http://www.beaconlab.it/pscan_chip_dev