# HG changeset patch
# User fz77
# Date 1416237357 18000
# Node ID 5e2af7c006b0f9f43b67c1e835c1b186491070e7
# Parent  6a5cfb8a872f8e82391a3fd028304faea4031fa0
Uploaded

diff -r 6a5cfb8a872f -r 5e2af7c006b0 pscan_chip/README.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/pscan_chip/README.txt	Mon Nov 17 10:15:57 2014 -0500
@@ -0,0 +1,24 @@
+COMPILE
+
+g++ pscan_chip_g.cpp -o pscan_chip_g -O3 -lgsl -lgslcblas
+
+(Needs GSL - Gnu Scientific Library)
+
+The wrapper assumes that the executables pscan_chip_g and twoBitToFa are on the Galaxy user's path.
+You can download twoBitToFa here:
+http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa
+
+LOC FILES
+
+.loc files (put them in the tool-data folder of your Galaxy install):
+
+twobit.loc 			location of genomes in 2bit format
+jaspar_pchip_background.loc	JASPAR background files
+transfac_pchip_background.loc	TRANSFAC background files
+
+Please contact federico.zambelli@unimi.it for bug report, suggestions and
+feed-back.
+
+For more infos on Pscan-ChIP go to:
+
+http://www.beaconlab.it/pscan_chip_dev