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annotate pscan_chip/README.txt @ 10:5e2af7c006b0 draft default tip

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author fz77
date Mon, 17 Nov 2014 10:15:57 -0500
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1 COMPILE
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2
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3 g++ pscan_chip_g.cpp -o pscan_chip_g -O3 -lgsl -lgslcblas
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4
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5 (Needs GSL - Gnu Scientific Library)
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7 The wrapper assumes that the executables pscan_chip_g and twoBitToFa are on the Galaxy user's path.
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8 You can download twoBitToFa here:
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9 http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa
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11 LOC FILES
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13 .loc files (put them in the tool-data folder of your Galaxy install):
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14
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15 twobit.loc location of genomes in 2bit format
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16 jaspar_pchip_background.loc JASPAR background files
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17 transfac_pchip_background.loc TRANSFAC background files
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18
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19 Please contact federico.zambelli@unimi.it for bug report, suggestions and
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20 feed-back.
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21
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22 For more infos on Pscan-ChIP go to:
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23
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24 http://www.beaconlab.it/pscan_chip_dev