Mercurial > repos > fcaramia > contra

changeset 10:35ed124594a6 draft

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Uploaded
author fcaramia
date Mon, 17 Jun 2013 02:56:36 -0400
parents 1c9c5f20f629
children 8c16a08d48e1
files tool_dependencies.xml
diffstat 1 files changed, 13 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jun 17 02:37:36 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 02:56:36 2013 -0400
@@ -30,6 +30,7 @@
            <actions>
 		<action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
 		<action type="shell_command">make all</action>
+		<action type="make_directory">$INSTALL_DIR/bin</action>
 		<action type="move_directory_files">
                     <source>bin</source>
                     <destination>$INSTALL_DIR/bin</destination>
@@ -51,10 +52,19 @@
                 <action type="shell_command">rm -rf BEDTools-User-Manual.v4.pdf</action>
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
 		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
+		<action type="make_directory">$INSTALL_DIR/bin</action>
+		<action type="move_file">
+                    <source>contra.y</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>baseline.py</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
 		<action type="move_directory_files">
-                    <source></source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>                                
+                    <source>scripts</source>
+                    <destination>$INSTALL_DIR/scripts</destination>
+                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>