# HG changeset patch
# User fcaramia
# Date 1371452196 14400
# Node ID 35ed124594a6662490b400cfa08b0073f7cab6ef
# Parent  1c9c5f20f62947ccd6b2f5d4791d2c938801021b
Uploaded

diff -r 1c9c5f20f629 -r 35ed124594a6 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 17 02:37:36 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 02:56:36 2013 -0400
@@ -30,6 +30,7 @@
            <actions>
 		<action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
 		<action type="shell_command">make all</action>
+		<action type="make_directory">$INSTALL_DIR/bin</action>
 		<action type="move_directory_files">
                     <source>bin</source>
                     <destination>$INSTALL_DIR/bin</destination>
@@ -51,10 +52,19 @@
                 <action type="shell_command">rm -rf BEDTools-User-Manual.v4.pdf</action>
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
 		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
+		<action type="make_directory">$INSTALL_DIR/bin</action>
+		<action type="move_file">
+                    <source>contra.y</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="move_file">
+                    <source>baseline.py</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
 		<action type="move_directory_files">
-                    <source></source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>                                
+                    <source>scripts</source>
+                    <destination>$INSTALL_DIR/scripts</destination>
+                </action>
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>