Mercurial > repos > fcaramia > contra

changeset 9:1c9c5f20f629 draft

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Uploaded
author fcaramia
date Mon, 17 Jun 2013 02:37:36 -0400
parents 22ada2c07df0
children 35ed124594a6
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Jun 17 01:50:40 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 02:37:36 2013 -0400
@@ -30,6 +30,10 @@
            <actions>
 		<action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
 		<action type="shell_command">make all</action>
+		<action type="move_directory_files">
+                    <source>bin</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>                                
 		<action type="set_environment">
 		   <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 		</action>
@@ -48,7 +52,7 @@
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
 		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
 		<action type="move_directory_files">
-                    <source>./</source>
+                    <source></source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>                                
                 <action type="set_environment">