# HG changeset patch
# User fcaramia
# Date 1371451056 14400
# Node ID 1c9c5f20f62947ccd6b2f5d4791d2c938801021b
# Parent  22ada2c07df04e4bf1d74aa5ebc99df0eedeec3e
Uploaded

diff -r 22ada2c07df0 -r 1c9c5f20f629 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 17 01:50:40 2013 -0400
+++ b/tool_dependencies.xml	Mon Jun 17 02:37:36 2013 -0400
@@ -30,6 +30,10 @@
            <actions>
 		<action type="download_by_url" target_filename="bedtools-2.17.0.tar.gz" >http://bedtools.googlecode.com/files/BEDTools.v2.17.0.tar.gz</action>
 		<action type="shell_command">make all</action>
+		<action type="move_directory_files">
+                    <source>bin</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>                                
 		<action type="set_environment">
 		   <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
 		</action>
@@ -48,7 +52,7 @@
                 <action type="shell_command">rm -rf BEDTools.v2.11.2.tar.gz</action>
 		<action type="shell_command">rm -rf CONTRA_User_Guide.2.0.pdf</action>
 		<action type="move_directory_files">
-                    <source>./</source>
+                    <source></source>
                     <destination>$INSTALL_DIR/bin</destination>
                 </action>                                
                 <action type="set_environment">