Mercurial > repos > eugen > bs_seq_test_2
changeset 9:1d716ddd7511 draft
Uploaded
author | eugen |
---|---|
date | Thu, 16 Aug 2012 04:55:57 -0400 |
parents | 87af1f51d270 |
children | 4d37a7026737 |
files | bsmap_meth_caller.sh |
diffstat | 1 files changed, 34 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bsmap_meth_caller.sh Thu Aug 16 04:55:57 2012 -0400 @@ -0,0 +1,34 @@ +#!/bin/bash +# +# Galaxy wrapper for BSMAP Methylation Caller +# + +set -e + +#get parameters + +until [ $# -eq 0 ] +do + case $1 in + input=*) + input=${1#input=} + ;; + method=*) + method=${1#method=} + ;; + output=*) + output=${1#output=} + ;; + tempdir=*) + tempdir=${1#tempdir=} + ;; + ref=*) + ref=${1#ref=} + ;; + esac + shift +done + +#echo $ref + +methratio.py -o $output -d $ref -q $input \ No newline at end of file