Mercurial > repos > eugen > bs_seq_test_2
changeset 8:87af1f51d270 draft
Deleted selected files
| author | eugen |
|---|---|
| date | Thu, 16 Aug 2012 04:55:49 -0400 |
| parents | d49ae6a0ecda |
| children | 1d716ddd7511 |
| files | bsmap_meth_caller.sh |
| diffstat | 1 files changed, 0 insertions(+), 34 deletions(-) [+] |
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--- a/bsmap_meth_caller.sh Thu Aug 16 04:13:42 2012 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,34 +0,0 @@ -#!/bin/bash -# -# Galaxy wrapper for BSMAP Methylation Caller -# - -set -e - -#get parameters - -until [ $# -eq 0 ] -do - case $1 in - input=*) - input=${1#input=} - ;; - method=*) - method=${1#method=} - ;; - output=*) - output=${1#output=} - ;; - tempdir=*) - tempdir=${1#tempdir=} - ;; - ref=*) - ref=${1#ref=} - ;; - esac - shift -done - -#echo $ref - -python ~/dependencies/bsmap-2.6/methratio.py -o $output -d $ref -q $input \ No newline at end of file