Mercurial > repos > estrain > srst2v2

changeset 12:b9876bb19cac draft

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Uploaded
author estrain
date Mon, 27 May 2019 20:58:38 -0400
parents 2bd184a17d85
children a2c25a81368b
files srst2v2.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/srst2v2.xml	Mon May 27 20:29:28 2019 -0400
+++ b/srst2v2.xml	Mon May 27 20:58:38 2019 -0400
@@ -99,7 +99,7 @@
           --other "'-p \${GALAXY_SLOTS:-1}'"
       #end if
 
-      ; cat *results.txt | sed /sample/${fname}/ > results.txt
+      ; cat *results.txt | sed s/sample/${fname}/ > results.txt
 
       #if $job_type.job == "mlst" 
         ; python $__tool_directory__/scoreProfiles.py --mlst_definitions $job_type.mlst_definitions --profile_cov $job_type.profile_cov --profile_max_mismatch $job_type.profile_max_mismatch --output srst2.pscores