Mercurial > repos > estrain > srst2v2

changeset 11:2bd184a17d85 draft

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Uploaded
author estrain
date Mon, 27 May 2019 20:29:28 -0400
parents a3e5181b3b81
children b9876bb19cac
files srst2v2.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/srst2v2.xml	Mon May 27 20:05:33 2019 -0400
+++ b/srst2v2.xml	Mon May 27 20:29:28 2019 -0400
@@ -102,7 +102,7 @@
       ; cat *results.txt | sed /sample/${fname}/ > results.txt
 
       #if $job_type.job == "mlst" 
-        ; python $__tool_directory__/scoreProfiles.py --mlst_definitions $job_type.mlst_definitions --profile_cov $job_type.profile_cov --profile_max_mismatch $job_type.profile_max_mismatch --output srst2.pscores ; cat srst2.pscores | sed s/sample/${fname}/ > srst2.pscores  
+        ; python $__tool_directory__/scoreProfiles.py --mlst_definitions $job_type.mlst_definitions --profile_cov $job_type.profile_cov --profile_max_mismatch $job_type.profile_max_mismatch --output srst2.pscores
       #end if
 
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