# HG changeset patch
# User estrain
# Date 1559003368 14400
# Node ID 2bd184a17d85e58de5a976948b5afb2971f88637
# Parent  a3e5181b3b81bb9bd638c98170b16b0bdf3349f8
Uploaded

diff -r a3e5181b3b81 -r 2bd184a17d85 srst2v2.xml
--- a/srst2v2.xml	Mon May 27 20:05:33 2019 -0400
+++ b/srst2v2.xml	Mon May 27 20:29:28 2019 -0400
@@ -102,7 +102,7 @@
       ; cat *results.txt | sed /sample/${fname}/ > results.txt
 
       #if $job_type.job == "mlst" 
-        ; python $__tool_directory__/scoreProfiles.py --mlst_definitions $job_type.mlst_definitions --profile_cov $job_type.profile_cov --profile_max_mismatch $job_type.profile_max_mismatch --output srst2.pscores ; cat srst2.pscores | sed s/sample/${fname}/ > srst2.pscores  
+        ; python $__tool_directory__/scoreProfiles.py --mlst_definitions $job_type.mlst_definitions --profile_cov $job_type.profile_cov --profile_max_mismatch $job_type.profile_max_mismatch --output srst2.pscores
       #end if
 
     ]]></command>