Mercurial > repos > estrain > data_manager_amrfinderplus_database_builder
changeset 5:651b88b77357 draft
Uploaded
| author | estrain |
|---|---|
| date | Tue, 08 Mar 2022 03:39:58 +0000 |
| parents | ea3d7d37eddc |
| children | b84c6bcd8058 |
| files | data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py |
| diffstat | 1 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py Tue Mar 08 03:08:58 2022 +0000 +++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py Tue Mar 08 03:39:58 2022 +0000 @@ -56,17 +56,15 @@ return version -def print_json (version): +def print_json (version,argspath): data_tables = {'data_tables':{'amrfinder_databases':{}}} data_tables["data_tables"]["amrfinder_databases"]["value"]="ARMFinderPlus_" + version data_tables["data_tables"]["amrfinder_databases"]["name"]=version - data_tables["data_tables"]["amrfinder_databases"]["path"]="/tool/tool-data/amrfinder/" + version + data_tables["data_tables"]["amrfinder_databases"]["path"]=argspath with open("out_file", 'w') as out: out.write(json.dumps(data_tables, sort_keys=True, indent=2)) - - def main(): parser = argparse.ArgumentParser(description='Download NCBI amrFinderPlus Databases') @@ -81,6 +79,6 @@ os.chdir("..") shutil.copytree("output",args.path[0]) - print_json(version) + print_json(version,args.path[0]) if __name__ == "__main__": main()