# HG changeset patch
# User estrain
# Date 1646710798 0
# Node ID 651b88b77357fe7c645fbcaf2eb4b8f7ac5665a1
# Parent  ea3d7d37eddcf828269f91f155e8c8c4f35b154c
Uploaded

diff -r ea3d7d37eddc -r 651b88b77357 data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py
--- a/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py	Tue Mar 08 03:08:58 2022 +0000
+++ b/data_manager_amrfinderplus_database_builder/data_manager/data_manager_amrfinderplus_database_builder.py	Tue Mar 08 03:39:58 2022 +0000
@@ -56,17 +56,15 @@
 
     return version 
 
-def print_json (version):
+def print_json (version,argspath):
     data_tables = {'data_tables':{'amrfinder_databases':{}}}
     data_tables["data_tables"]["amrfinder_databases"]["value"]="ARMFinderPlus_" + version
     data_tables["data_tables"]["amrfinder_databases"]["name"]=version
-    data_tables["data_tables"]["amrfinder_databases"]["path"]="/tool/tool-data/amrfinder/" + version
+    data_tables["data_tables"]["amrfinder_databases"]["path"]=argspath
 
     with open("out_file", 'w') as out:
       out.write(json.dumps(data_tables, sort_keys=True, indent=2))
 
-
-
 def main():
    
     parser = argparse.ArgumentParser(description='Download NCBI amrFinderPlus Databases')
@@ -81,6 +79,6 @@
     os.chdir("..")
 
     shutil.copytree("output",args.path[0])
-    print_json(version)
+    print_json(version,args.path[0])
 
 if __name__ == "__main__": main()