Mercurial > repos > eduardo > annotateviz
changeset 2:31e855c95936 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/annotateviz commit 9bbaa3eacc76ff3bf2b6da313cc0d85705f15dd1-dirty
| author | eduardo |
|---|---|
| date | Sat, 17 Jun 2017 14:43:40 -0400 |
| parents | ce990f818362 |
| children | 3302f18f9e16 |
| files | annotateviz.xml static/trinotateviz.html |
| diffstat | 2 files changed, 5 insertions(+), 9 deletions(-) [+] |
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--- a/annotateviz.xml Sat Jun 17 13:45:05 2017 -0400 +++ b/annotateviz.xml Sat Jun 17 14:43:40 2017 -0400 @@ -14,12 +14,11 @@ --outdir $output.files_path $trackxml && ## $output.files_path/index.html $output; -python $__tool_directory__/annotateviz.py $db > $__tool_directory__/trans.json && -sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output && -cp $__tool_directory__/static/js/gff_app.js ${output.files_path} && -cp $__tool_directory__/static/css/main.css ${output.files_path} && -cp $__tool_directory__/static/trans.json ${output.files_path}; - +python $__tool_directory__/annotateviz.py $db > $__tool_directory__/trans.json && +sed "s@input_db@${__app__.security.encode_id($db.id)}@" $__tool_directory__/static/trinotateviz.html > $output && +cp $__tool_directory__/static/js/gff_app.js ${output.files_path} && +cp $__tool_directory__/static/css/main.css ${output.files_path} && +cp $__tool_directory__/trans.json ${output.files_path}; ]]></command> <configfiles> <configfile name="trackxml"><![CDATA[<?xml version="1.0"?>
--- a/static/trinotateviz.html Sat Jun 17 13:45:05 2017 -0400 +++ b/static/trinotateviz.html Sat Jun 17 14:43:40 2017 -0400 @@ -21,9 +21,6 @@ <div id="GenomeBrowser" style="height: 100%; width: 100%; padding: 0; border: 0;"></div> <div style="display: none">JBrowseDefaultMainPage</div> - - - <script type="text/javascript"> <script type="text/javascript"> // jshint unused: false var dojoConfig = {