Mercurial > repos > drosofff > msp_sr_readmap_and_size_histograms

changeset 11:edd57052f0bb draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/msp_sr_readmap_and_size_histograms commit e27d18d58ae095e7fad4b08b04370857a1d37964-dirty
author mvdbeek
date Tue, 02 Feb 2016 12:57:04 -0500
parents 71a46afb9ce7
children 2fc0d4756048
files readmap.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/readmap.xml	Tue Feb 02 12:54:00 2016 -0500
+++ b/readmap.xml	Tue Feb 02 12:57:04 2016 -0500
@@ -98,7 +98,7 @@
 
     rm=read.delim("${readmap_dataframe}", header=T, row.names=NULL)
     n_samples=length(unique(rm\$sample))
-    genes=unique(levels(rm$gene))
+    genes=unique(levels(rm\$gene))
     per_gene_readmap=lapply(genes, function(x) subset(rm, gene==x)) ####### ?
     n_genes=length(per_gene_readmap)