Mercurial > repos > dfornika > data_manager_build_mash_sketch
changeset 9:97170f449e08 draft
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
| author | dfornika |
|---|---|
| date | Thu, 25 Jul 2019 15:03:34 -0400 |
| parents | 8c4654df4d58 |
| children | 1c863cb8fa5b |
| files | data_manager/mash_build_sketch.py data_manager/mash_build_sketch.xml |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/mash_build_sketch.py Thu Jul 25 14:56:00 2019 -0400 +++ b/data_manager/mash_build_sketch.py Thu Jul 25 15:03:34 2019 -0400 @@ -41,9 +41,9 @@ '-i', mash_args['input'], '-o', 'sketch', ] - + print("***" + mash_sketch_args_list + "***") subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list, - cwd=str(os.path.join(target_directory, database_path))) + cwd=os.path.join(target_directory, database_path)) bagit_args_list = [ database_path,
--- a/data_manager/mash_build_sketch.xml Thu Jul 25 14:56:00 2019 -0400 +++ b/data_manager/mash_build_sketch.xml Thu Jul 25 15:03:34 2019 -0400 @@ -13,6 +13,7 @@ --threads \${GALAXY_SLOTS:-1} --kmer-size ${kmer_size} --sketch-size ${sketch_size} + --input '${input}' --database-name '${database_name}' ]]> </command>