Mercurial > repos > dfornika > data_manager_build_mash_sketch

changeset 8:8c4654df4d58 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author dfornika
date Thu, 25 Jul 2019 14:56:00 -0400
parents 628353238ad1
children 97170f449e08
files data_manager/mash_build_sketch.py
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/mash_build_sketch.py	Thu Jul 25 14:51:41 2019 -0400
+++ b/data_manager/mash_build_sketch.py	Thu Jul 25 14:56:00 2019 -0400
@@ -35,15 +35,15 @@
             raise
     
     mash_sketch_args_list = [
-        '-p', str(mash_args['threads']),
-        '-k', str(mash_args['kmer_size']),
-        '-s', str(mash_args['sketch_size']),
+        '-p', mash_args['threads'],
+        '-k', mash_args['kmer_size'],
+        '-s', mash_args['sketch_size'],
         '-i', mash_args['input'],
         '-o', 'sketch',
     ]
         
     subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list,
-                          cwd=os.path.join(target_directory, database_path))
+                          cwd=str(os.path.join(target_directory, database_path)))
     
     bagit_args_list = [
         database_path,