# HG changeset patch
# User dfornika
# Date 1564081414 14400
# Node ID 97170f449e08ace2dccb5cc4c262ee8f2fd919f9
# Parent  8c4654df4d58f8d60d1105340ca644b7d8197b49
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_mash_sketch/ commit 423cf96266f6ac433052ff72edb1397502313010-dirty

diff -r 8c4654df4d58 -r 97170f449e08 data_manager/mash_build_sketch.py
--- a/data_manager/mash_build_sketch.py	Thu Jul 25 14:56:00 2019 -0400
+++ b/data_manager/mash_build_sketch.py	Thu Jul 25 15:03:34 2019 -0400
@@ -41,9 +41,9 @@
         '-i', mash_args['input'],
         '-o', 'sketch',
     ]
-        
+    print("***" + mash_sketch_args_list + "***")
     subprocess.check_call(['mash', 'sketch'] + mash_sketch_args_list,
-                          cwd=str(os.path.join(target_directory, database_path)))
+                          cwd=os.path.join(target_directory, database_path))
     
     bagit_args_list = [
         database_path,
diff -r 8c4654df4d58 -r 97170f449e08 data_manager/mash_build_sketch.xml
--- a/data_manager/mash_build_sketch.xml	Thu Jul 25 14:56:00 2019 -0400
+++ b/data_manager/mash_build_sketch.xml	Thu Jul 25 15:03:34 2019 -0400
@@ -13,6 +13,7 @@
           --threads \${GALAXY_SLOTS:-1}
           --kmer-size ${kmer_size}
           --sketch-size ${sketch_size}
+          --input '${input}'
           --database-name '${database_name}'
     ]]>
     </command>