Mercurial > repos > dfornika > data_manager_build_kraken2_database

annotate data_manager_conf.xml @ 30:0aaff8fb824d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit d59f93c41e32c857f9e82a59c0c408cafc10c233-dirty
author dfornika
date Wed, 24 Apr 2019 17:42:44 -0400
parents 7233538ef3cb
children 23c68bbf573d
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b1805f086b66 planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 9b4d704c147761201fa9f1450fcf5ba6871104d8-dirty
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1 <data_managers>
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2 <data_manager tool_file="data_manager/kraken2_build_standard.xml" id="kraken2_build_standard" version="1.0">
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3 <data_table name="kraken2_databases">
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4 <output>
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5 <column name="value"/>
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6 <column name="name"/>
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7 <column name="path" output_ref="out_file">
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8 <move type="directory">
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9 <source>${path}</source>
fd3fd1cae8dd planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
10
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11 </move>
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
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13 <value_translation type="function">abspath</value_translation>
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14 </column>
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15 </output>
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16 </data_table>
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17 </data_manager>
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18 <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
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19 <data_table name="kraken2_databases">
d04d198e185a planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
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20 <output>
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21 <column name="value"/>
d04d198e185a planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
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22 <column name="name"/>
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23 <column name="path" output_ref="out_file">
21
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24 <move type="directory">
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25 <source>${path}</source>
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26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
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27 </move>
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28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
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29 <value_translation type="function">abspath</value_translation>
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30 </column>
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31 </output>
fd3fd1cae8dd planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
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32 </data_table>
fd3fd1cae8dd planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
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33 </data_manager>
fd3fd1cae8dd planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
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34 <data_manager tool_file="data_manager/kraken2_build_special.xml" id="kraken2_build_special" version="1.0">
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35 <data_table name="kraken2_databases">
fd3fd1cae8dd planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
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36 <output>
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37 <column name="value"/>
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38 <column name="name"/>
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39 <column name="path" output_ref="out_file">
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40 <move type="directory">
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41 <source>${path}</source>
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42 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
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43 </move>
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44 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
16
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45 <value_translation type="function">abspath</value_translation>
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46 </column>
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47 </output>
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48 </data_table>
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49 </data_manager>
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50 <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0">
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51 <data_table name="kraken2_databases">
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52 <output>
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53 <column name="value"/>
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54 <column name="name"/>
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55 <column name="path" output_ref="out_file">
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56 <move type="directory">
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57 <source>${path}</source>
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58 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
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59 </move>
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60 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
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61 <value_translation type="function">abspath</value_translation>
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62 </column>
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63 </output>
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64 </data_table>
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65 </data_manager>
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66 </data_managers>