Mercurial > repos > dfornika > data_manager_build_kraken2_database

diff data_manager_conf.xml @ 24:7233538ef3cb draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit 70494d589aa1990618ebc7a895e91477d41c3203-dirty
author dfornika
date Tue, 05 Mar 2019 15:10:42 -0500
parents fd3fd1cae8dd
children 23c68bbf573d
line wrap: on
line diff
--- a/data_manager_conf.xml	Tue Mar 05 13:11:02 2019 -0500
+++ b/data_manager_conf.xml	Tue Mar 05 15:10:42 2019 -0500
@@ -47,4 +47,20 @@
 	    </output>
 	</data_table>
     </data_manager>
+    <data_manager tool_file="data_manager/kraken2_build_minikraken.xml" id="kraken2_build_minikraken" version="1.0">
+	<data_table name="kraken2_databases">
+	    <output>
+		<column name="value"/>
+		<column name="name"/>
+		<column name="path" output_ref="out_file">
+		    <move type="directory">
+		        <source>${path}</source>
+			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target>
+		    </move>
+		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation>
+		    <value_translation type="function">abspath</value_translation>
+		</column>
+	    </output>
+	</data_table>
+    </data_manager>
 </data_managers>