Mercurial > repos > dfornika > data_manager_build_kraken2_database

changeset 16:d04d198e185a draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty
author dfornika
date Thu, 28 Feb 2019 18:33:09 -0500
parents c6db7ff0b3f8
children f07512f5fd08
files data_manager_conf.xml
diffstat 1 files changed, 15 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager_conf.xml	Thu Feb 28 18:19:35 2019 -0500
+++ b/data_manager_conf.xml	Thu Feb 28 18:33:09 2019 -0500
@@ -44,4 +44,19 @@
 	    </output>
 	</data_table>
     </data_manager>
+    <data_manager tool_file="data_manager/kraken2_build_custom.xml" id="kraken2_build_custom" version="1.0">
+	<data_table name="kraken2_databases">
+	    <output>
+		<column name="value"/>
+		<column name="name"/>
+		<column name="path" output_ref="out_file">
+		    <move type="directory" relativize_symlinks="True">
+			<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_database/${value}</target>
+		    </move>
+		    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_database/${value}</value_translation>
+		    <value_translation type="function">abspath</value_translation>
+		</column>
+	    </output>
+	</data_table>
+    </data_manager>
 </data_managers>