Mercurial > repos > dfornika > confindr

changeset 3:2ab80b982480 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/confindr/ commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"
author dfornika
date Fri, 31 Jan 2020 18:53:30 +0000
parents d2a5df8ada29
children 202247a3c969
files confindr.xml
diffstat 1 files changed, 19 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/confindr.xml	Fri Jan 31 18:43:21 2020 +0000
+++ b/confindr.xml	Fri Jan 31 18:53:30 2020 +0000
@@ -42,7 +42,7 @@
     </inputs>
 
     <outputs>
-        <data name="report" format="tabular" from_work_dir="output/confindr_report.csv" label="${tool.name} on ${on_string} report file" />
+        <data name="report" format="csv" from_work_dir="output/confindr_report.csv" label="${tool.name} on ${on_string} report file" />
     </outputs>
 
     <tests>
@@ -59,20 +59,28 @@
 
 ConFindr will produce a tab-seperated output file with the following outputs:
 
-+---------------+------------------------------------------------+
-|  Column       | Description                                    |
-+===============+================================================+
-|               |                                                |
-+---------------+------------------------------------------------+
-|               |                                                |
-+---------------+------------------------------------------------+
-|               |                                                |
-+---------------+------------------------------------------------+
-
++--------------------------------+------------------------------------------------+
+|  Column                        | Description                                    |
++================================+================================================+
+| Sample                         |                                                |
++--------------------------------+------------------------------------------------+
+| Genus                          |                                                |
++--------------------------------+------------------------------------------------+
+| ContamStatus                   |                                                |
++--------------------------------+------------------------------------------------+
+| PercentContam                  |                                                |
++--------------------------------+------------------------------------------------+
+| PercentContamStandardDeviation |                                                |
++--------------------------------+------------------------------------------------+
+| BasesExamined                  |                                                |
++--------------------------------+------------------------------------------------+
+| DatabaseDownloadDate           |                                                |
++--------------------------------+------------------------------------------------+
 
 **Example Output**
 
 ::
+Sample,Genus,NumContamSNVs,ContamStatus,PercentContam,PercentContamStandardDeviation,BasesExamined,DatabaseDownloadDate
 
 
     ]]></help>