Mercurial > repos > dfornika > confindr
changeset 4:202247a3c969 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/confindr/ commit 9e41ac63171c3e3a6fd2b4d018d0c60c9f1fbae1"
author | dfornika |
---|---|
date | Fri, 31 Jan 2020 19:09:14 +0000 |
parents | 2ab80b982480 |
children | |
files | confindr.xml |
diffstat | 1 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/confindr.xml Fri Jan 31 18:53:30 2020 +0000 +++ b/confindr.xml Fri Jan 31 19:09:14 2020 +0000 @@ -10,6 +10,7 @@ <command detect_errors="exit_code"><![CDATA[ mkdir input && + mkdir databases && #if str( $reads_input.reads_input_selector ) == "paired" ln -s '$reads_input.reads_1' 'input/reads_R1.fastq' && ln -s '$reads_input.reads_2' 'input/reads_R2.fastq' && @@ -20,8 +21,10 @@ #end if confindr.py - --input_directory input - --output_name output + --threads \${GALAXY_SLOTS:-1} + --databases 'databases' + --input_directory 'input' + --output_name 'output' ]]></command>