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annotate cgview_xml_builder.xml @ 6:ecd17b1142e6 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author dfornika
date Mon, 08 Jul 2019 23:18:02 -0400
parents 4d65b79b638d
children fece9758fea4
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1 <tool id="cgview_xml_builder" name="cgview XML builder" version="1.0+galaxy0">
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2 <description>Circular Genome Viewer</description>
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3 <requirements>
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4 <requirement type="package" version="1.0">cgview</requirement>
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5 </requirements>
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6 <command detect_errors="exit_code">
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7 <![CDATA[
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8 cgview_xml_builder.pl
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9 -sequence '${reference}'
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10 -blast '${blast_output}'
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11 -output '${output}'
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12 ]]>
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13 </command>
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14 <inputs>
3
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15 <param name="reference" type="data" format="genbank,fasta" label="Input" help=""/>
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16 <param name="blast_output" type="data" format="tabular" />
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17 </inputs>
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18 <outputs>
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19 <data name="output" format="xml"/>
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20 </outputs>
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21 <tests>
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22 </tests>
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23 <help>
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24 </help>
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25 <citations>
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26 <citation type="bibtex">
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27 @article{
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28 stothard2004circular,
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29 title={Circular genome visualization and exploration using CGView},
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30 author={Stothard, Paul and Wishart, David S},
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31 journal={Bioinformatics},
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32 volume={21},
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33 number={4},
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34 pages={537--539},
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35 year={2004},
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36 publisher={Oxford University Press}
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37 }
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38 </citation>
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39 </citations>
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40 </tool>