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view cgview_xml_builder.xml @ 6:ecd17b1142e6 draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 423cf96266f6ac433052ff72edb1397502313010-dirty
author dfornika
date Mon, 08 Jul 2019 23:18:02 -0400
parents 4d65b79b638d
children fece9758fea4
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<tool id="cgview_xml_builder" name="cgview XML builder" version="1.0+galaxy0">
    <description>Circular Genome Viewer</description>
    <requirements>
        <requirement type="package" version="1.0">cgview</requirement>
    </requirements>   
    <command detect_errors="exit_code">
        <![CDATA[
          cgview_xml_builder.pl
           -sequence '${reference}'
           -blast '${blast_output}'
           -output '${output}'
        ]]>  
    </command>
    <inputs>
        <param name="reference" type="data" format="genbank,fasta" label="Input" help=""/>
        <param name="blast_output" type="data" format="tabular" />
    </inputs>
    <outputs>
        <data name="output" format="xml"/> 
    </outputs>
    <tests>
    </tests>
    <help>
    </help>
    <citations>
        <citation type="bibtex">
            @article{
              stothard2004circular,
              title={Circular genome visualization and exploration using CGView},
              author={Stothard, Paul and Wishart, David S},
              journal={Bioinformatics},
              volume={21},
              number={4},
              pages={537--539},
              year={2004},
              publisher={Oxford University Press}
            }
    </citation>
  </citations>
</tool>