Mercurial > repos > dfornika > cgview
changeset 6:ecd17b1142e6 draft
planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit 423cf96266f6ac433052ff72edb1397502313010-dirty
| author | dfornika |
|---|---|
| date | Mon, 08 Jul 2019 23:18:02 -0400 |
| parents | 1ede45efb8eb |
| children | 1393e1b26f0b |
| files | reformat_blastn_output.xml |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/reformat_blastn_output.xml Mon Jul 08 23:14:35 2019 -0400 +++ b/reformat_blastn_output.xml Mon Jul 08 23:18:02 2019 -0400 @@ -5,7 +5,8 @@ <command detect_errors="exit_code"> <![CDATA[ awk -F'\t' 'BEGIN {OFS = FS} $2 = $2 FS "match"' '${input}' | - sed '1iquery_id\tmatch_id\tmatch_description\t%_identity\talignment_length\tmismatches\tgap_openings\tq_start\tq_end\ts_start\ts_end\tevalue\tbit_score' + sed '1iquery_id\tmatch_id\tmatch_description\t%_identity\talignment_length\tmismatches\tgap_openings\tq_start\tq_end\ts_start\ts_end\tevalue\tbit_score' | + sed '1i#PROGRAM=blastn' > '${output}' ]]> </command>