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changeset 0:d7e81eba876f draft

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planemo upload for repository https://github.com/dfornika/galaxy/tree/master/tools/cgview commit c74272bb72948dfdff23e78a2d1e4955ac05d258-dirty
author dfornika
date Mon, 08 Jul 2019 20:35:17 -0400
parents
children 95ef3d2c9511
files cgview.xml cgview_xml_builder.xml
diffstat 2 files changed, 76 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cgview.xml	Mon Jul 08 20:35:17 2019 -0400
@@ -0,0 +1,38 @@
+<tool id="cgview" name="cgview" version="1.0+galaxy0">
+    <description>Circular Genome Viewer</description>
+    <requirements>
+        <requirement type="package" version="1.0">cgview</requirement>
+    </requirements>   
+    <command detect_errors="exit_code">
+        <![CDATA[
+          cgview
+           -i '${input}'
+           -o '${output}'
+        ]]>  
+    </command>
+    <inputs>
+        <param name="input" type="data" format="xml" label="Input" help=""/>
+    </inputs>
+    <outputs>
+        <data name="output" format="png"/> 
+    </outputs>
+    <tests>
+    </tests>
+    <help>
+    </help>
+    <citations>
+        <citation type="bibtex">
+            @article{
+              stothard2004circular,
+              title={Circular genome visualization and exploration using CGView},
+              author={Stothard, Paul and Wishart, David S},
+              journal={Bioinformatics},
+              volume={21},
+              number={4},
+              pages={537--539},
+              year={2004},
+              publisher={Oxford University Press}
+            }
+    </citation>
+  </citations>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cgview_xml_builder.xml	Mon Jul 08 20:35:17 2019 -0400
@@ -0,0 +1,38 @@
+<tool id="cgview_xml_builder" name="cgview XML builder" version="1.0+galaxy0">
+    <description>Circular Genome Viewer</description>
+    <requirements>
+        <requirement type="package" version="1.0">cgview</requirement>
+    </requirements>   
+    <command detect_errors="exit_code">
+        <![CDATA[
+          cgview_xml_builder.pl
+           -sequence '${input}'
+           -output '${output}'
+        ]]>  
+    </command>
+    <inputs>
+        <param name="input" type="data" format="gbk" label="Input" help=""/>
+    </inputs>
+    <outputs>
+        <data name="output" format="xml"/> 
+    </outputs>
+    <tests>
+    </tests>
+    <help>
+    </help>
+    <citations>
+        <citation type="bibtex">
+            @article{
+              stothard2004circular,
+              title={Circular genome visualization and exploration using CGView},
+              author={Stothard, Paul and Wishart, David S},
+              journal={Bioinformatics},
+              volume={21},
+              number={4},
+              pages={537--539},
+              year={2004},
+              publisher={Oxford University Press}
+            }
+    </citation>
+  </citations>
+</tool>