Mercurial > repos > devteam > data_manager_twobit_builder
changeset 3:e697ffc1197e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 984fd87f7bb30469ac078cf32d2cbb42e62c11dd
| author | iuc |
|---|---|
| date | Fri, 09 Jun 2017 05:25:37 -0400 |
| parents | c9896bb1f03c |
| children | fced964b054a |
| files | data_manager/twobit_builder.xml tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 4 insertions(+), 25 deletions(-) [+] |
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--- a/data_manager/twobit_builder.xml Tue Apr 04 17:54:54 2017 -0400 +++ b/data_manager/twobit_builder.xml Fri Jun 09 05:25:37 2017 -0400 @@ -5,10 +5,10 @@ <description>builder</description> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/twobit_builder.py' - '${out_file}' - --fasta_filename '${all_fasta_source.fields.path}' - --fasta_dbkey '${all_fasta_source.fields.dbkey}' - --fasta_description '${all_fasta_source.fields.name}' + '$out_file' + --fasta_filename '$all_fasta_source.fields.path' + --fasta_dbkey '$all_fasta_source.fields.dbkey' + --fasta_description '$all_fasta_source.fields.name' ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
--- a/tool_data_table_conf.xml.sample Tue Apr 04 17:54:54 2017 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,21 +0,0 @@ -<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> -<tables> - <!-- Locations of all fasta files under genome directory --> - <table name="all_fasta" comment_char="#"> - <columns>value, dbkey, name, path</columns> - <file path="tool-data/all_fasta.loc" /> - </table> - <!-- Locations of 2bit sequence files for use in Lastz --> - <table name="lastz_seqs" comment_char="#"> - <columns>value, name, path</columns> - <file path="tool-data/lastz_seqs.loc" /> - </table> - <table name="twobit" comment_char="#"> - <columns>value, path</columns> - <file path="tool-data/twobit.loc" /> - </table> - <table name="alignseq_seq" comment_char="#"> - <columns>type, value, path</columns> - <file path="tool-data/alignseq.loc" /> - </table> -</tables>