Mercurial > repos > devteam > data_manager_twobit_builder
changeset 4:fced964b054a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit ba82deebf385e4b2d4c55a43f34f0553478e6059
| author | iuc |
|---|---|
| date | Fri, 09 Jun 2017 05:30:02 -0400 |
| parents | e697ffc1197e |
| children | ced9f4a48806 |
| files | data_manager/twobit_builder.xml tool_data_table_conf.xml.sample |
| diffstat | 2 files changed, 25 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/twobit_builder.xml Fri Jun 09 05:25:37 2017 -0400 +++ b/data_manager/twobit_builder.xml Fri Jun 09 05:30:02 2017 -0400 @@ -5,10 +5,10 @@ <description>builder</description> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/twobit_builder.py' - '$out_file' - --fasta_filename '$all_fasta_source.fields.path' - --fasta_dbkey '$all_fasta_source.fields.dbkey' - --fasta_description '$all_fasta_source.fields.name' + '${out_file}' + --fasta_filename '${all_fasta_source.fields.path}' + --fasta_dbkey '${all_fasta_source.fields.dbkey}' + --fasta_description '${all_fasta_source.fields.name}' ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence">
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Fri Jun 09 05:30:02 2017 -0400 @@ -0,0 +1,21 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Locations of all fasta files under genome directory --> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> + <!-- Locations of 2bit sequence files for use in Lastz --> + <table name="lastz_seqs" comment_char="#"> + <columns>value, name, path</columns> + <file path="tool-data/lastz_seqs.loc" /> + </table> + <table name="twobit" comment_char="#"> + <columns>value, path</columns> + <file path="tool-data/twobit.loc" /> + </table> + <table name="alignseq_seq" comment_char="#"> + <columns>type, value, path</columns> + <file path="tool-data/alignseq.loc" /> + </table> +</tables>