Mercurial > repos > devteam > data_manager_twobit_builder
view data_manager/twobit_builder.xml @ 3:e697ffc1197e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_twobit_builder commit 984fd87f7bb30469ac078cf32d2cbb42e62c11dd
author | iuc |
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date | Fri, 09 Jun 2017 05:25:37 -0400 |
parents | c9896bb1f03c |
children | fced964b054a |
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<tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.2"> <requirements> <requirement type="package" version="324">ucsc-fatotwobit</requirement> </requirements> <description>builder</description> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/twobit_builder.py' '$out_file' --fasta_filename '$all_fasta_source.fields.path' --fasta_dbkey '$all_fasta_source.fields.dbkey' --fasta_description '$all_fasta_source.fields.name' ]]></command> <inputs> <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> <options from_data_table="all_fasta"/> </param> <param name="sequence_name" type="text" value="" label="Name of sequence" /> <param name="sequence_id" type="text" value="" label="ID for sequence" /> </inputs> <outputs> <data name="out_file" format="data_manager_json"/> </outputs> <tests> <test> <param name="all_fasta_source" value="sacCer2"/> <param name="sequence_name" value=""/> <output name="sequence_id" file="data_manager_two_bit_out_1.dat"/> </test> </tests> <help> .. class:: infomark **Notice:** If you leave name, description, or id blank, it will be generated automatically. </help> </tool>