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1 <?xml version="1.0"?>
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2 <tool id="aaacaret005" name="Extract IDs From Prediction Result" version="0.0.1">
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3 <description>This tool parse the compound name/ids from prediction result</description>
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4 <command><![CDATA[
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5 awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' | paste -sd "," - > $extracted_IDs ;
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6 ]]></command>
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7
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8
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9 <inputs>
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10 <param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" />
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11 </inputs>
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12 <outputs>
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13 <data name="extracted_IDs" type="data" format="txt" label="Ids-${predictionfile.name}" />
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14 </outputs>
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15 <help>
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16 </help>
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17 </tool>
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