Mercurial > repos > deepakjadmin > mayatool2_test1
annotate parse.xml @ 2:8802d7d7d52a draft
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| author | deepakjadmin |
|---|---|
| date | Thu, 15 Dec 2016 14:11:44 -0500 |
| parents | |
| children |
| rev | line source |
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| 2 | 1 <?xml version="1.0"?> |
| 2 <tool id="aaacaret005" name="Extract IDs From Prediction Result" version="0.0.1"> | |
| 3 <description>This tool parse the compound name/ids from prediction result</description> | |
| 4 <command><![CDATA[ | |
| 5 awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' | paste -sd "," - > $extracted_IDs ; | |
| 6 ]]></command> | |
| 7 | |
| 8 | |
| 9 <inputs> | |
| 10 <param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" /> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="extracted_IDs" type="data" format="txt" label="Ids-${predictionfile.name}" /> | |
| 14 </outputs> | |
| 15 <help> | |
| 16 </help> | |
| 17 </tool> |