view parse.xml @ 3:00f4b17061f3 draft default tip

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<?xml version="1.0"?>
<tool id="aaacaret005" name="Extract IDs From Prediction Result" version="0.0.1">
<description>This tool parse the compound name/ids from prediction result</description>
<command><![CDATA[ 
    			awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' | paste -sd "," - > $extracted_IDs ;
	]]></command>


<inputs>
<param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" /> 
</inputs>
<outputs>
<data name="extracted_IDs" type="data" format="txt" label="Ids-${predictionfile.name}" />
</outputs>
<help>
</help>
</tool>