Mercurial > repos > deepakjadmin > mayatool2_test1

changeset 2:8802d7d7d52a draft

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Uploaded
author deepakjadmin
date Thu, 15 Dec 2016 14:11:44 -0500
parents 09690f2b8239
children 00f4b17061f3
files parse.xml
diffstat 1 files changed, 17 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/parse.xml	Thu Dec 15 14:11:44 2016 -0500
@@ -0,0 +1,17 @@
+<?xml version="1.0"?>
+<tool id="aaacaret005" name="Extract IDs From Prediction Result" version="0.0.1">
+<description>This tool parse the compound name/ids from prediction result</description>
+<command><![CDATA[ 
+    			awk -F '\t' '{print $1}' $predictionfile | sed '1d' | sed 's/"//g' | sed -e 's/^[ \t]*//;s/[ \t]*$//' | paste -sd "," - > $extracted_IDs ;
+	]]></command>
+
+
+<inputs>
+<param name="predictionfile" type="data" format="txt,csv,tabular" label="Predition Result File" help ="upload gcac prediction result file obtained from the tool 'Extract_Compound_IDs_From_Prediction_Result_based_on_scores'" /> 
+</inputs>
+<outputs>
+<data name="extracted_IDs" type="data" format="txt" label="Ids-${predictionfile.name}" />
+</outputs>
+<help>
+</help>
+</tool>