Mercurial > repos > dchristiany > data_manager_proteore
changeset 8:1c5a49b120b6 draft
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
| author | dchristiany |
|---|---|
| date | Fri, 19 Oct 2018 04:28:46 -0400 |
| parents | d16a52bf0e5b |
| children | 6c47b77d89d6 |
| files | data_manager/resource_building.xml data_manager_conf.xml tool-data/protein_atlas.loc.sample tool-data/proteinatlas.loc.sample tool_data_table_conf.xml.sample |
| diffstat | 5 files changed, 16 insertions(+), 16 deletions(-) [+] |
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--- a/data_manager/resource_building.xml Fri Oct 19 04:22:37 2018 -0400 +++ b/data_manager/resource_building.xml Fri Oct 19 04:28:46 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.6" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.7" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>
--- a/data_manager_conf.xml Fri Oct 19 04:22:37 2018 -0400 +++ b/data_manager_conf.xml Fri Oct 19 04:28:46 2018 -0400 @@ -7,9 +7,9 @@ <column name="name" /> <column name="path" output_ref="output" > <move type="file"> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteinatlas/${path}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/${path}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteinatlas/${path}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/protein_atlas.loc.sample Fri Oct 19 04:28:46 2018 -0400 @@ -0,0 +1,12 @@ +#This file lists the locations name and values of reference files +#for Get expression data tool +#This is a tab separated file (TAB, not 4 spaces !) +# +#<name> <value> <path> +# +#protein_atlas.loc could look something like this: +# +#HPA normal tissue 19/07/2018 HPA_normal_tissue /projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv +#HPA pathology 19/07/2018 HPA_pathology /projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv +#HPA full atlas 19/07/2018 HPA_full_atlas /projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv +#
--- a/tool-data/proteinatlas.loc.sample Fri Oct 19 04:22:37 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,12 +0,0 @@ -#This file lists the locations name and values of reference files -#for Get expression data tool -#This is a tab separated file (TAB, not 4 spaces !) -# -#<name> <value> <path> -# -#proteinatlas.loc could look something like this: -# -#HPA normal tissue 19/07/2018 HPA_normal_tissue /projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv -#HPA pathology 19/07/2018 HPA_pathology /projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv -#HPA full atlas 19/07/2018 HPA_full_atlas /projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv -#
--- a/tool_data_table_conf.xml.sample Fri Oct 19 04:22:37 2018 -0400 +++ b/tool_data_table_conf.xml.sample Fri Oct 19 04:28:46 2018 -0400 @@ -6,7 +6,7 @@ </table> <table name="protein_atlas" comment_char="#"> <columns>name, value, path</columns> - <file path="tool-data/proteinatlas.loc" /> + <file path="tool-data/protein_atlas.loc" /> </table> <table name="id_mapping" comment_char="#"> <columns>name, value, path</columns>