Mercurial > repos > dchristiany > data_manager_proteore
changeset 7:d16a52bf0e5b draft
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty
| author | dchristiany |
|---|---|
| date | Fri, 19 Oct 2018 04:22:37 -0400 |
| parents | 9c75521e4a64 |
| children | 1c5a49b120b6 |
| files | data_manager/resource_building.py data_manager/resource_building.xml data_manager_conf.xml tool_data_table_conf.xml.sample |
| diffstat | 4 files changed, 7 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/resource_building.py Fri Oct 19 04:19:36 2018 -0400 +++ b/data_manager/resource_building.py Fri Oct 19 04:22:37 2018 -0400 @@ -51,7 +51,7 @@ tmp=open(path,"r").readlines() tissue_name = tissue_name + " " + time.strftime("%d/%m/%Y") data_table_entry = dict(value = tissue, name = tissue_name, path = path) - _add_data_table_entry(data_manager_dict, data_table_entry, "proteinatlas") + _add_data_table_entry(data_manager_dict, data_table_entry, "protein_atlas") #######################################################################################################
--- a/data_manager/resource_building.xml Fri Oct 19 04:19:36 2018 -0400 +++ b/data_manager/resource_building.xml Fri Oct 19 04:22:37 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.5" tool_type="manage_data"> +<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.6" tool_type="manage_data"> <description> to create or update reference files for proteore tools </description>
--- a/data_manager_conf.xml Fri Oct 19 04:19:36 2018 -0400 +++ b/data_manager_conf.xml Fri Oct 19 04:22:37 2018 -0400 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> - <data_table name="proteinatlas"> + <data_table name="protein_atlas"> <output> <column name="value" /> <column name="name" />
--- a/tool_data_table_conf.xml.sample Fri Oct 19 04:19:36 2018 -0400 +++ b/tool_data_table_conf.xml.sample Fri Oct 19 04:22:37 2018 -0400 @@ -4,6 +4,10 @@ <columns>tissue,name,value</columns> <file path="tool-data/peptide_atlas.loc"/> </table> + <table name="protein_atlas" comment_char="#"> + <columns>name, value, path</columns> + <file path="tool-data/proteinatlas.loc" /> + </table> <table name="id_mapping" comment_char="#"> <columns>name, value, path</columns> <file path="tool-data/id_mapping.loc" />