# HG changeset patch
# User dchristiany
# Date 1539937726 14400
# Node ID 1c5a49b120b662eb1afcea2bfb873deee053ea39
# Parent  d16a52bf0e5bb3e0cf74e9419ce726104ab5b752
planemo upload commit d703392579d96e480c6461ce679516b12cefb3de-dirty

diff -r d16a52bf0e5b -r 1c5a49b120b6 data_manager/resource_building.xml
--- a/data_manager/resource_building.xml	Fri Oct 19 04:22:37 2018 -0400
+++ b/data_manager/resource_building.xml	Fri Oct 19 04:28:46 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.6" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="0.7" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
diff -r d16a52bf0e5b -r 1c5a49b120b6 data_manager_conf.xml
--- a/data_manager_conf.xml	Fri Oct 19 04:22:37 2018 -0400
+++ b/data_manager_conf.xml	Fri Oct 19 04:28:46 2018 -0400
@@ -7,9 +7,9 @@
                 <column name="name" />
                 <column name="path" output_ref="output" >
                     <move type="file">
-                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteinatlas/${path}</target>
+                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/${path}</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteinatlas/${path}</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${path}</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
diff -r d16a52bf0e5b -r 1c5a49b120b6 tool-data/protein_atlas.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/protein_atlas.loc.sample	Fri Oct 19 04:28:46 2018 -0400
@@ -0,0 +1,12 @@
+#This file lists the locations name and values of reference files 
+#for Get expression data tool
+#This is a tab separated file (TAB, not 4 spaces !)
+#
+#<name> <value>	<path>
+#
+#protein_atlas.loc could look something like this:
+#
+#HPA normal tissue 19/07/2018	HPA_normal_tissue	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv
+#HPA pathology 19/07/2018	HPA_pathology	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv
+#HPA full atlas 19/07/2018	HPA_full_atlas	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv
+#
diff -r d16a52bf0e5b -r 1c5a49b120b6 tool-data/proteinatlas.loc.sample
--- a/tool-data/proteinatlas.loc.sample	Fri Oct 19 04:22:37 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,12 +0,0 @@
-#This file lists the locations name and values of reference files 
-#for Get expression data tool
-#This is a tab separated file (TAB, not 4 spaces !)
-#
-#<name> <value>	<path>
-#
-#proteinatlas.loc could look something like this:
-#
-#HPA normal tissue 19/07/2018	HPA_normal_tissue	/projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv
-#HPA pathology 19/07/2018	HPA_pathology	/projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv
-#HPA full atlas 19/07/2018	HPA_full_atlas	/projet/galaxydev/galaxy/tool-data/proteinatlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv
-#
diff -r d16a52bf0e5b -r 1c5a49b120b6 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Fri Oct 19 04:22:37 2018 -0400
+++ b/tool_data_table_conf.xml.sample	Fri Oct 19 04:28:46 2018 -0400
@@ -6,7 +6,7 @@
     </table>
     <table name="protein_atlas" comment_char="#">
       <columns>name, value, path</columns>
-      <file path="tool-data/proteinatlas.loc" />
+      <file path="tool-data/protein_atlas.loc" />
     </table>
     <table name="id_mapping" comment_char="#">
       <columns>name, value, path</columns>