Mercurial > repos > davidvanzessen > argalaxy_tools
changeset 40:a2fdcf1a2e50 draft
Uploaded
author | davidvanzessen |
---|---|
date | Tue, 26 Jan 2016 02:58:17 -0500 |
parents | 2e0a7c35082e |
children | 85566b336a72 |
files | report_clonality/r_wrapper.sh |
diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/report_clonality/r_wrapper.sh Fri Jan 22 10:54:01 2016 -0500 +++ b/report_clonality/r_wrapper.sh Tue Jan 26 02:58:17 2016 -0500 @@ -58,7 +58,8 @@ circos_file="$outputDir/${sample}_VJ_circos.txt" echo -e -n "labels$(cat ${circos_file})" > ${circos_file} cat "${circos_file}" | $CIRCOSTOOLS/tableviewer/bin/parse-table -configfile $dir/circos/parse-table.conf 2>&1 | $CIRCOSTOOLS/tableviewer/bin/make-conf -dir $outputDir/circos/ - /home/galaxy/Downloads/circos-master/bin/circos -conf $outputDir/circos/circos.conf 2>&1 + #/home/galaxy/Downloads/circos-master/bin/circos -conf $outputDir/circos/circos.conf 2>&1 + circos -conf $outputDir/circos/circos.conf 2>&1 mv $outputDir/circos/circos.png $outputDir/circosVJ_${sample}.png