Mercurial > repos > davidvanzessen > argalaxy_tools

changeset 39:2e0a7c35082e draft

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Uploaded
author davidvanzessen
date Fri, 22 Jan 2016 10:54:01 -0500
parents 539618b939bc
children a2fdcf1a2e50
files report_clonality/RScript.r
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
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line diff
--- a/report_clonality/RScript.r	Fri Jan 22 10:44:50 2016 -0500
+++ b/report_clonality/RScript.r	Fri Jan 22 10:54:01 2016 -0500
@@ -564,7 +564,8 @@
     ReplicateReads = data.frame(data.table(clonalityFrame)[, list(Type=.N), by=c("Sample", "Replicate", "clonaltype")])
     ReplicateReads = data.frame(data.table(ReplicateReads)[, list(Reads=.N), by=c("Sample", "Replicate")])
     clonalFreqCount$Reads = as.numeric(clonalFreqCount$Reads)
-    ReplicateReads$squared = ReplicateReads$Reads * ReplicateReads$Reads
+    ReplicateReads$Reads = as.numeric(ReplicateReads$Reads)
+    ReplicateReads$squared = as.numeric(ReplicateReads$Reads * ReplicateReads$Reads)
     
     ReplicatePrint <- function(dat){
       write.table(dat[-1], paste("ReplicateReads_", unique(dat[1])[1,1] , ".csv", sep=""), sep=",",quote=F,na="-",row.names=F,col.names=F)