Mercurial > repos > david-hoover > garbage1
changeset 5:23fc4a7dcf37 draft
Uploaded
| author | david-hoover |
|---|---|
| date | Wed, 12 Sep 2012 11:40:57 -0400 |
| parents | 6a81b7acaad4 |
| children | 2cef58c36b0f |
| files | simple_tool.xml |
| diffstat | 1 files changed, 36 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/simple_tool.xml Wed Sep 12 11:40:57 2012 -0400 @@ -0,0 +1,36 @@ +<?xml version="1.0"?> +<tool id="simple_tool" name="Simple Tool"> + <description>from /home or /data (Helix/Biowulf only)</description> + <command interpreter="sh">simple_tool.sh '$filepath' $output $userEmail</command> + <inputs> + <param name="filepath" type="text" size="100" label="File path (on Helix)" /> + </inputs> + <outputs> + <data format="txt" name="output" label="Helix Import: $filepath" /> + </outputs> + <help> + +.. class:: infomark + +**Copying files** + +This tool will allow you to upload a single file that is in the /home or /data areas. There is no browse function, +however, so you will need to give the full path name. If you have permission to read the file, Galaxy can import the file. + +.. class:: warningmark + +**Important Notes** + +- The file path must be a file, not a directory +- You must give the fullpath to the file (/home/user/myfile.txt, not ./myfile.txt) +- You must have permission to read the file + +----- + +**Example** + +- /home/user/bamfiles/abc123.bam +- /data/anotheruser/data/good_data/very_good_data.txt + + </help> +</tool>