# HG changeset patch
# User david-hoover
# Date 1347464457 14400
# Node ID 23fc4a7dcf37c7be07ebe9d6b6db397b1e815108
# Parent  6a81b7acaad4718dc100b0d14e4b4c6f94d9abf5
Uploaded

diff -r 6a81b7acaad4 -r 23fc4a7dcf37 simple_tool.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/simple_tool.xml	Wed Sep 12 11:40:57 2012 -0400
@@ -0,0 +1,36 @@
+<?xml version="1.0"?>
+<tool id="simple_tool" name="Simple Tool">
+  <description>from /home or /data (Helix/Biowulf only)</description>
+  <command interpreter="sh">simple_tool.sh '$filepath' $output $userEmail</command>
+  <inputs>   
+    <param name="filepath" type="text" size="100" label="File path (on Helix)" />
+  </inputs>
+  <outputs> 
+    <data format="txt" name="output" label="Helix Import: $filepath" />
+  </outputs>
+  <help>
+
+.. class:: infomark
+
+**Copying files**
+
+This tool will allow you to upload a single file that is in the /home or /data areas.  There is no browse function,
+however, so you will need to give the full path name.  If you have permission to read the file, Galaxy can import the file.
+
+.. class:: warningmark
+
+**Important Notes**
+
+- The file path must be a file, not a directory
+- You must give the fullpath to the file (/home/user/myfile.txt, not ./myfile.txt)
+- You must have permission to read the file
+
+-----
+
+**Example**
+
+- /home/user/bamfiles/abc123.bam
+- /data/anotheruser/data/good_data/very_good_data.txt
+
+  </help>
+</tool>