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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
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HMMER3/f [3.2.1 | June 2018] NAME long.2.aln LENG 70 MAXL 188 ALPH DNA RF no MM no CONS yes CS no MAP yes DATE Tue May 28 13:12:02 2019 NSEQ 3 EFFN 3.000000 CKSUM 2903879936 STATS LOCAL MSV -9.1232 0.72663 STATS LOCAL VITERBI -9.3215 0.72663 STATS LOCAL FORWARD -3.0734 0.72663 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.13844 1.68610 1.59008 1.23605 1.38629 1.38629 1.38629 1.38629 0.22977 3.95124 1.68173 1.46634 0.26236 0.00000 * 1 0.96677 1.92013 1.91053 1.12362 1 a - - - 1.38629 1.38629 1.38629 1.38629 0.04726 3.76874 3.76874 1.46634 0.26236 1.55497 0.23724 2 2.36920 2.17182 2.47016 0.34545 2 t - - - 1.83446 0.84257 1.83446 1.38629 0.42541 1.12882 3.76874 2.03997 0.13930 0.54886 0.86182 3 1.16410 2.43420 0.71774 2.18679 11 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.00446 2.13960 0.87914 1.10134 12 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.23985 1.03062 2.36449 0.81477 13 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.94121 2.04768 2.06592 1.03815 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.95731 2.35593 0.91678 2.10812 15 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.94121 2.04768 2.06592 1.03815 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.71655 2.45957 2.83486 0.23610 17 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.06732 1.16410 0.86888 1.95298 18 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.71655 2.45957 2.83486 0.23610 19 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 1.16410 2.43420 0.71774 2.18679 20 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.92413 1.09732 2.14928 1.87869 21 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.89989 0.21012 3.04772 2.44162 22 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.16029 3.12721 2.94402 2.96400 23 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.00446 2.13960 0.87914 1.10134 24 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.95731 2.35593 0.91678 2.10812 25 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.94121 2.04768 2.06592 1.03815 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.92413 1.09732 2.14928 1.87869 27 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.16029 3.12721 2.94402 2.96400 28 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.71655 2.45957 2.83486 0.23610 29 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.71655 2.45957 2.83486 0.23610 30 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.71655 2.45957 2.83486 0.23610 31 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.71655 2.45957 2.83486 0.23610 32 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.94121 2.04768 2.06592 1.03815 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.92413 1.09732 2.14928 1.87869 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.89989 0.21012 3.04772 2.44162 35 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 0.16029 3.12721 2.94402 2.96400 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.23985 1.03062 2.36449 0.81477 37 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 1.16410 2.43420 0.71774 2.18679 38 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.71655 2.45957 2.83486 0.23610 39 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.72479 3.30093 0.15917 3.10680 40 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.00446 2.13960 0.87914 1.10134 41 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.94121 2.04768 2.06592 1.03815 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.16029 3.12721 2.94402 2.96400 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.16029 3.12721 2.94402 2.96400 44 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.16029 3.12721 2.94402 2.96400 45 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 0.16029 3.12721 2.94402 2.96400 46 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.71655 2.45957 2.83486 0.23610 47 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.00446 2.13960 0.87914 1.10134 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.94121 2.04768 2.06592 1.03815 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.26706 0.84214 2.39363 0.98270 50 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.92413 1.09732 2.14928 1.87869 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.71655 2.45957 2.83486 0.23610 52 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.72479 3.30093 0.15917 3.10680 53 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 2.00446 2.13960 0.87914 1.10134 54 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 2.23985 1.03062 2.36449 0.81477 55 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 0.16029 3.12721 2.94402 2.96400 56 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.06732 1.16410 0.86888 1.95298 57 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 0.16029 3.12721 2.94402 2.96400 58 a - - - 2.06732 2.06732 2.06732 0.47735 0.34065 1.31133 3.95124 1.13545 0.38754 1.09861 0.40547 51 0.16029 3.12721 2.94402 2.96400 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 2.89989 0.21012 3.04772 2.44162 63 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 0.92413 1.09732 2.14928 1.87869 64 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 1.16410 2.43420 0.71774 2.18679 65 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 0.16029 3.12721 2.94402 2.96400 66 a - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 2.71655 2.45957 2.83486 0.23610 67 t - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 1.16410 2.43420 0.71774 2.18679 68 g - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 2.89989 0.21012 3.04772 2.44162 69 c - - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 0.94121 2.04768 2.06592 1.03815 70 a - - - 1.38629 1.38629 1.38629 1.38629 0.34065 3.95124 1.31133 1.46634 0.26236 1.09861 0.40547 60 2.19131 2.02277 2.27840 0.42542 71 t - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 61 2.27199 2.66585 0.29804 2.46413 72 g - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 62 0.34983 2.44790 2.25491 2.26497 73 a - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 63 2.27199 2.66585 0.29804 2.46413 74 g - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 64 2.27199 2.66585 0.29804 2.46413 75 g - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 65 0.34983 2.44790 2.25491 2.26497 76 a - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 66 2.19131 2.02277 2.27840 0.42542 77 t - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 67 0.34983 2.44790 2.25491 2.26497 78 a - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 68 2.19131 2.02277 2.27840 0.42542 79 t - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 69 0.34983 2.44790 2.25491 2.26497 80 a - - - 1.38629 1.38629 1.38629 1.38629 0.05266 3.66325 3.66325 1.46634 0.26236 1.72320 0.19662 70 0.34983 2.44790 2.25491 2.26497 81 a - - - 1.74658 1.12199 1.74658 1.12199 0.29394 1.36775 * 0.82573 0.57610 0.00000 * //